国产日韩欧美一区二区三区三州_亚洲少妇熟女av_久久久久亚洲av国产精品_波多野结衣网站一区二区_亚洲欧美色片在线91_国产亚洲精品精品国产优播av_日本一区二区三区波多野结衣 _久久国产av不卡

?

反轉(zhuǎn)錄環(huán)介導(dǎo)等溫?cái)U(kuò)增技術(shù)對(duì)丙型肝炎病毒可視化分型檢測(cè)

2016-07-28 00:27劉金霞孫殿興

趙 娜,劉金霞,孫殿興

?

反轉(zhuǎn)錄環(huán)介導(dǎo)等溫?cái)U(kuò)增技術(shù)對(duì)丙型肝炎病毒可視化分型檢測(cè)

趙娜1,2,劉金霞2,孫殿興2

1.承德醫(yī)學(xué)院病原生物學(xué)教研室,承德067000;2.中國(guó)人民解放軍白求恩國(guó)際和平醫(yī)院全軍肝病診治中心,石家莊050082

摘要:目的應(yīng)用反轉(zhuǎn)錄環(huán)介導(dǎo)等溫?cái)U(kuò)增技術(shù)(RT-LAMP)可視化檢測(cè)丙型肝炎病毒(HCV)1b和2a基因型,為RT-LAMP技術(shù)應(yīng)用于現(xiàn)場(chǎng)或基層醫(yī)院提供初步探索經(jīng)驗(yàn)。方法首先,收集臨床陽(yáng)性樣本并用熒光定量PCR分型檢測(cè),把樣本基本分為1型和非1型。然后分別根據(jù)HCV 1b和2a基因型設(shè)計(jì)RT-LAMP引物并優(yōu)化反應(yīng)條件,通過(guò)互換模板實(shí)驗(yàn)驗(yàn)證這2套引物的特異性,并通過(guò)檢測(cè)稀釋的模板以驗(yàn)證引物的靈敏度。同時(shí)用鈣黃綠素進(jìn)行產(chǎn)物顯色,使HCV分型檢測(cè)可視化。最后用RT-LAMP方法檢測(cè)臨床樣本,并計(jì)算陽(yáng)性率,應(yīng)用配對(duì)卡方檢驗(yàn)比較RT-LAMP和熒光定量PCR的統(tǒng)計(jì)學(xué)差異。結(jié)果優(yōu)化好的RT-LAMP體系的特異性好,對(duì)HCV 1b型的檢測(cè)靈敏度為103 IU/mL,2a型的檢測(cè)靈敏度為104 IU/mL。另外,利用鈣黃綠素進(jìn)行產(chǎn)物檢測(cè)的效果和電泳結(jié)果相當(dāng)。通過(guò)對(duì)臨床樣本分型檢測(cè),HCV 1b型樣本的RT-LAMP檢測(cè)結(jié)果和熒光定量PCR差異無(wú)統(tǒng)計(jì)學(xué)意義(P>0.05),HCV 2a型樣本的RT-LAMP檢測(cè)結(jié)果和熒光定量PCR差異有統(tǒng)計(jì)學(xué)意義(P<0.05),但是未檢出的樣本中有2例為HCV 2b型。結(jié)論RT-LAMP對(duì)HCV的可視化分型檢測(cè)具有較好的特異性和靈敏度,操作簡(jiǎn)便,具有在現(xiàn)場(chǎng)或基層醫(yī)院的應(yīng)用前景。

關(guān)鍵詞:丙型肝炎病毒(HCV);反轉(zhuǎn)錄環(huán)介導(dǎo)等溫?cái)U(kuò)增(RT-LAMP);分型檢測(cè)

Supported by the Medicine and Hygiene Research Foundation of the PLA (No. CBJ14C010)

丙型肝炎病毒(Hepatitis C virus,HCV)是僅次于乙型肝炎病毒引起慢性肝炎的主要病原體,如果不進(jìn)行正確治療,將有相當(dāng)比例的患者會(huì)發(fā)展為肝硬化甚至肝癌。根據(jù)HCV序列之間超過(guò)30%的差異,可將HCV主要分為6個(gè)基因型,每一型又可細(xì)分為不同的亞型。HCV基因分型檢測(cè)具有重要的臨床意義:1)HCV基因型分布具有地區(qū)差異。在湖北以1b型為主,其次為2a型[1],在山東則以2a型為主,其次為1b型[2]。我國(guó)HCV的流行株幾乎全部是1b型和2a型。2)不同基因型患者的臨床表現(xiàn)也不同。眾多學(xué)者認(rèn)為1b型與肝硬化和肝癌有密切關(guān)系[3-5],也有學(xué)者提出1b型患者的肝硬化程度還與甘油三酯、脂蛋白等指標(biāo)有關(guān)[6]。3)不同基因型患者使用干擾素的療效也不同。在干擾素加利巴韋林的治療中,HCV 1型的治療效果劣于非1型[7]。

雖然熒光定量PCR技術(shù)對(duì)HCV進(jìn)行分型在大型醫(yī)院已經(jīng)十分普遍,但是這項(xiàng)技術(shù)對(duì)實(shí)驗(yàn)環(huán)境和操作能力有較高的要求,因此無(wú)法普及到現(xiàn)場(chǎng)或基層醫(yī)院。反轉(zhuǎn)錄環(huán)介導(dǎo)等溫?cái)U(kuò)增(Reverse transcription loop-mediated isothermal amplification,RT-LAMP)技術(shù)是一種特異性和靈敏度均較高、操作簡(jiǎn)單的等溫RNA擴(kuò)增技術(shù),尤其是這項(xiàng)技術(shù)對(duì)實(shí)驗(yàn)環(huán)境和人員的操作技能要求不高。雖然已經(jīng)有學(xué)者介紹過(guò)RT-LAMP對(duì)HCV的檢測(cè)[8-10],但是RT-LAMP對(duì)HCV進(jìn)行分型檢測(cè)未見(jiàn)介紹;雖然對(duì)HCV分型的方法還有直接測(cè)序法、型特異性引物PCR分型法[11]等,但是上述技術(shù)操作繁瑣,不適合在現(xiàn)場(chǎng)或基層醫(yī)院應(yīng)用。本研究針對(duì)1b型和2a型HCV的5′UTR區(qū)保守序列設(shè)計(jì)分型引物,并使用鈣黃綠素使產(chǎn)物顯色,初步實(shí)現(xiàn)了HCV的可視化分型檢測(cè)。

1材料與方法

1.1主要試劑病毒RNA提取試劑盒(Viral RNA Mini Kit)購(gòu)自QIAamp公司,TIANScript cDNA第一鏈合成試劑盒購(gòu)自凱杰公司,逆轉(zhuǎn)錄酶(M-MLV Reverse Transcriptase)購(gòu)自Vazyme公司,Bst DNA聚合酶和10×reaction buffer購(gòu)自NEB公司,重組核糖核酸酶抑制劑(RNA酶抑制劑)購(gòu)自Invitrogen公司,鈣黃綠素購(gòu)自Sigma公司,100 bp DNA Marker購(gòu)自TaKaRa公司。

1.2模板來(lái)源收集中國(guó)人民解放軍白求恩國(guó)際和平醫(yī)院肝病科2015年4月至2015年7月住院患者血清并按照RNA提取試劑盒的操作說(shuō)明提取RNA,送該院檢驗(yàn)科用熒光定量PCR進(jìn)行分型檢測(cè)(其靈敏度為1×103IU/mL),選擇HCV RNA含量范圍為1×104~1×107IU/mL的74例樣本,其中1型有38例,非1型有36例。檢驗(yàn)科另提供HCV RNA含量為1×107IU/mL的HCV 1b和HCV 2a定值質(zhì)控品進(jìn)行條件優(yōu)化、特異性和靈敏性實(shí)驗(yàn)。另收集10例健康人血清提取RNA后做陰性對(duì)照。

1.3RT-LAMP型特異性引物根據(jù)GenBank公布的HCV 1b型(GenBank登錄號(hào):L02836、KC844051、GU451222、AY460204、KC844052、EF638081、EU857431、DQ071885、AB779562、HQ639947、KF676352)和2a型(GenBank登錄號(hào):HQ639938、HQ639939、HQ639943、HQ639944、HQ639945、KC844043、KF676351、KF676352、KP721475)參考序列,應(yīng)用Clustal Omega軟件進(jìn)行序列對(duì)比,根據(jù)兩型的5′非編碼區(qū)區(qū)段(5′UTR)確定HCV 1b和2a的型特異性位點(diǎn),然后借助引物設(shè)計(jì)軟件Primer Explorer V4(http://primerexplorer.jp/e/)設(shè)計(jì)型特異性引物。型特異性引物設(shè)計(jì)要求:在F2/B2或F3/B3的3′端有分型位點(diǎn),在F1c/B1c的5′端有分型位點(diǎn)(但不要求每條引物末端都要有分型位點(diǎn))。擴(kuò)增HCV 1b和2a的型特異性引物由上海生工公司合成,引物序列見(jiàn)表1。表1中F3和B3為外引物,F(xiàn)IP(由F1c和F2組成)和BIP(由B1c和B2組成)為內(nèi)引物。

1.4RT-LAMP體系的優(yōu)化RT-LAMP 50 μL反應(yīng)體系包括:內(nèi)引物(FIP/BIP)、外引物(F3/B3)、dNTPs、甜菜堿、MgSO4、反應(yīng)緩沖液、Bst DNA聚合酶、AMV、RNA酶抑制劑和RNA模板。逐步改變對(duì)擴(kuò)增影響較大的因素(甜菜堿、MgSO4)的濃度:甜菜堿以0.4、0.8、1.2、1.6 mol/L的濃度順序擴(kuò)增;MgSO4以2、4、6、8 mmol/L的濃度順序擴(kuò)增。根據(jù)電泳條帶的亮度確定最優(yōu)反應(yīng)條件。擴(kuò)增時(shí)間約60 min,擴(kuò)增溫度為65 ℃,將反應(yīng)管置于冰上終止反應(yīng)。

表1HCV 1b和2a型的RT-LAMP引物

Tab.1RT-LAMP primers of HCV genotypes 1b and 2a

基因型Genotypes引物名稱(chēng)Primer序列Sequence(5'→3')長(zhǎng)度Length/bpHCV1bF3AGTACACCGGAATTGCCAG19B3CGGTTGGTGTTACGTTTGGT20FIPACTCGGCTAGCAGTCTCGCGTCTTGGATCAACCCGCTCA39BIPGTGGTACTGCCTGATAGGGTGCGATTCGTGCTCATGGTGCA41HCV2aF3ACTCTATGCCCGGCCATT18B3TACTCCGCCAACGATCTGG19FIPAGCACCCTATCAGGCAGTACCAAAGACTGCTAGCCGAGTAGC42BIPTGCACCATGAGCACAAATCCCACCGGAAACGTAACGTCTTGT42

1.5擴(kuò)增結(jié)果判定本研究用以下2種方法進(jìn)行判斷:1)瓊脂糖凝膠電泳:將5 μL擴(kuò)增產(chǎn)物上樣于2%瓊脂糖中電泳約40 min,在紫外光下觀(guān)察擴(kuò)增條帶。陽(yáng)性擴(kuò)增可見(jiàn)特征性的梯狀條帶,陰性結(jié)果無(wú)此現(xiàn)象。2)鈣黃綠素可視化檢測(cè):在反應(yīng)前向體系中加入1 μL配好的鈣黃綠素和MnCl2混合液(鈣黃綠素和MnCl2的終濃度分別為5 mmol/L和10 mmol/L),反應(yīng)結(jié)束后將反應(yīng)管置于黑色背景下裸眼觀(guān)察,呈現(xiàn)綠色為陽(yáng)性,保持橙色為陰性。

1.6分型特異性和靈敏度特異性實(shí)驗(yàn):分別以HCV RNA質(zhì)控品、健康人RNA提取物和雙蒸水做模板進(jìn)行RT-LAMP擴(kuò)增,根據(jù)電泳和染色結(jié)果判定兩套引物的特異性。靈敏度實(shí)驗(yàn):將HCV 1b和2a質(zhì)控品分別用雙蒸水進(jìn)行一系列10倍稀釋至102IU/mL,將稀釋后的樣本分別進(jìn)行RT-LAMP擴(kuò)增,評(píng)價(jià)RT-LAMP的靈敏度。將特異性和靈敏度實(shí)驗(yàn)重復(fù)4次。

1.7統(tǒng)計(jì)學(xué)分析RT-LAMP分別將38例1型、36例非1型和10例陰性樣本的RNA進(jìn)行檢測(cè)。以熒光定量PCR為標(biāo)準(zhǔn),計(jì)算陽(yáng)性率,應(yīng)用SPSS 17.0軟件對(duì)該結(jié)果和熒光定量PCR做McNemar配對(duì)卡方檢驗(yàn),雙側(cè)檢驗(yàn)進(jìn)行統(tǒng)計(jì)學(xué)推斷,P<0.05為差異有統(tǒng)計(jì)學(xué)意義。

2結(jié)果

2.1RT-LAMP條件優(yōu)化通過(guò)對(duì)擴(kuò)增效率影響較大的甜菜堿和MgSO4進(jìn)行一系列濃度梯度實(shí)驗(yàn)后,優(yōu)化好的RT-LAMP反應(yīng)體系為:內(nèi)引物(FIP和BIP)各1.6 μmol/L,外引物(F3和B3)各0.2 μmol/L,甜菜堿 0.8 mol/L,MgSO46 mmol/L,dNTPs 1.4 mmol/L,模板10 μL(HCV RNA含量為1×107IU/mL),8U Bst DNA聚合酶、5 μL 10×反應(yīng)緩沖液,100 U AMV,20 U RNA酶抑制劑。

(A)RT-LAMP電泳圖:1-4 HCV 1b型的特異性引物對(duì)4種模板的檢測(cè)結(jié)果,其中,1表示HCV 1b型為模板;2表示HCV 2a型為模板;3表示健康人RNA提取物為模板;4表示雙蒸水為模板;5-8 HCV 2a型的引物對(duì)4種模板的檢測(cè)結(jié)果,其中5表示HCV 2a位模板;6表示HCV 1b為模板;7表示健康人RNA提取物為模板;8表示雙蒸水為模板。(B)鈣黃綠素可視化檢測(cè)效果,各管的排列順序同上。M:100 bp DNA marker。(A) Electrophoresis pattern of RT-LAMP. 1-4: 4 templates detection results by HCV genotype 1b specific primers, among which, 1 indicates HCV genotype 1b as template; 2 indicates HCV genotype 2a as template; 3 indicates RNA extract from healthy human as template; 4 indicates ddH2O as template; 5-8 templates detection results by HCV genotype 2a specific primers, among which, 5 indicates HCV genotype 2a as template; 6 indicates HCV genotype 1b as template; 7 indicates RNA extract from healthy human as template;8 indicates ddH2O as template.(B) Visualized detection by calcein, the order of each tube is the same as above. M: 100 bp DNA marker.圖1 RT-LAMP分型特異性實(shí)驗(yàn)Fig.1 Specificity of genotyping assay by RT-LAMP

2.2分型特異性實(shí)驗(yàn)?zāi)0寤Q實(shí)驗(yàn)驗(yàn)證HCV 1b型引物特異性:以HCV 1b型質(zhì)控、2a型質(zhì)控、健康人RNA 提取物和雙蒸水為陰性對(duì)照模板進(jìn)行擴(kuò)增;模板互換實(shí)驗(yàn)驗(yàn)證HCV 2a型引物特異性:以HCV 2a 型質(zhì)控、1b型質(zhì)控、健康人RNA 提取物和雙蒸水為陰性對(duì)照模板進(jìn)行擴(kuò)增。電泳結(jié)果如圖1A所示,HCV 1b型特異性引物只使HCV 1b型模板發(fā)生擴(kuò)增,其他模板均沒(méi)有被擴(kuò)增;HCV 2a型特異性引物只使HCV 2a型模板發(fā)生擴(kuò)增,其他模板也均沒(méi)有被擴(kuò)增,說(shuō)明引物未受到其他無(wú)關(guān)的RNA的影響,特異性較好。另外,由圖1B可知,鈣黃綠素的可視化效果和電泳結(jié)果相當(dāng)。4次重復(fù)實(shí)驗(yàn)結(jié)果與上述實(shí)驗(yàn)結(jié)果相當(dāng)。

2.3分型靈敏度實(shí)驗(yàn)RT-LAMP對(duì)HCV 1b型質(zhì)控稀釋樣本的擴(kuò)增結(jié)果如圖2A表示,隨著稀釋倍數(shù)的逐漸增大,模板量從106IU/mL~103IU/mL呈現(xiàn)逐漸減弱的條帶,模板量為102IU/mL未見(jiàn)擴(kuò)增,可知RT-LAMP檢測(cè)HCV 1b型的靈敏度為103IU/mL,這和熒光定量PCR的靈敏度相當(dāng)。另外,圖2B中鈣黃綠素可視化效果同電泳結(jié)果相當(dāng)。RT-LAMP對(duì)HCV 2a型稀釋樣本的擴(kuò)增結(jié)果如圖2C所示,隨著稀釋度的逐漸增大,模板量從106IU/mL~104IU/mL呈現(xiàn)逐漸減弱的條帶,模板量為103IU/mL和102IU/mL未見(jiàn)擴(kuò)增,可知RT-LAMP檢測(cè)HCV 2a型的靈敏度為104IU/mL,這比熒光定量PCR的靈敏度低1個(gè)數(shù)量級(jí)。圖2D中的鈣黃綠素可視化效果同電泳結(jié)果相當(dāng)。

對(duì)HCV 1b和2a質(zhì)控分別重復(fù)擴(kuò)增4次,驗(yàn)證檢測(cè)的重復(fù)性。結(jié)果如表2所示,和上述實(shí)驗(yàn)結(jié)果相當(dāng),重復(fù)性較好。

(A)RT-LAMP檢測(cè)HCV 1b型的電泳圖,其中,1-5表示HCV RNA含量分別為106、105、104、103、102 IU/mL。(B)RT-LAMP檢測(cè)HCV 1b型的鈣黃綠素可視化效果,各管的排列順序同上圖。(C)RT-LAMP檢測(cè)HCV 2a型的電泳圖,其中,1-5表示HCV RNA含量分別為106、105、104、103、102 IU/mL。(D)RT-PCR檢測(cè)HCV 2a型的鈣黃綠素可視化效果,各管的排列順序同上圖。M:100 bp DNA marker;N:雙蒸水陰性對(duì)照。(A) Electrophoresis pattern for detection of HCV genotype 1b by RT-LAMP.1-5 indicate the electrophoresis results of HCV RNA including 106, 105, 104, 103, and 102 IU/mL.(B) Calcein effect for detection of HCV genotype 1b by RT-LAMP, the order of each tubes is the same as above.(C) Electrophoresis pattern for detection of HCV genotype 2a by RT-LAMP. 1-5 indicate the electrophoresis results of HCV RNA including 106,105,104,103,102 IU/mL.(D) Calcein effect for detection of HCV genotype 2a by RT-LAMP, the order of each tube is the same as above.M:100 bp DNA Marker. N: negative control using ddH2O.圖2 RT-LAMP的分型靈敏度實(shí)驗(yàn)Fig.2 Genotyping sensitivity assay of RT-LAMP

表2RT-LAMP的重復(fù)性實(shí)驗(yàn)Tab.2Repeatability assay of RT-LAMP

基因型Genotypes重復(fù)次數(shù)Repetitions重復(fù)性(IU/mL)Repeatability1061051041031021b44/44/44/44/40/42a44/44/44/40/40/4

2.4臨床樣本的分型檢測(cè)RT-LAMP分別擴(kuò)增經(jīng)熒光定量PCR檢測(cè)的38例HCV 1型、36例HCV非1型和10例陰性對(duì)照。計(jì)算陽(yáng)性率,應(yīng)用SPSS17.0軟件,配對(duì)卡方檢驗(yàn)對(duì)擴(kuò)增結(jié)果進(jìn)行統(tǒng)計(jì)學(xué)分析,結(jié)果如表3所示。

對(duì)HCV 1b型樣本的檢測(cè)結(jié)果:RT-LAMP法檢出34例,陽(yáng)性率為89.47%,和熒光定量PCR的差異沒(méi)有統(tǒng)計(jì)學(xué)意義(P>0.05);對(duì)HCV 2a型樣本檢測(cè)結(jié)果:RT-LAMP法檢出30例,陽(yáng)性率為83.33%,經(jīng)配對(duì)卡方檢驗(yàn),和熒光定量PCR的差異有統(tǒng)計(jì)學(xué)意義(P<0.05)。對(duì)RT-LAMP未檢出的樣本凝膠電泳后的產(chǎn)物送測(cè)序,結(jié)果未檢出的4例1型樣本為HCV 1a型;未檢出的6例非1型樣本中有兩例為HCV 2b型,另4例其HCV RNA含量約為103IU/mL,低于RT-LAMP對(duì)HCV 2a型的檢測(cè)靈敏度(104IU/mL)。

表3RT-LAMP的臨床分型結(jié)果

Tab.3Clinical genotyping results of RT-LAMP

基因型Genotypes陽(yáng)性率(%)Positiverate(%)P值Pvalue1b89.47(34/38)0.1252a83.33(30/36)0.031

3討論

本研究應(yīng)用RT-LAMP對(duì)HCV進(jìn)行可視化分型檢測(cè),為HCV 1b和2a這兩類(lèi)基因型不同的患者的臨床治療提供一定的科學(xué)依據(jù),有利于在現(xiàn)場(chǎng)或基層醫(yī)院的丙肝患者的個(gè)體化治療。

使用RT-LAMP對(duì)HCV分型檢測(cè)有如下優(yōu)勢(shì):第一,操作的優(yōu)勢(shì)。本研究操作簡(jiǎn)單、設(shè)備廉價(jià),僅需一臺(tái)保證恒溫的普通水浴箱即可,不用如熒光定量PCR昂貴的儀器,也不用設(shè)定退火延伸的溫度值、循環(huán)次數(shù)等參數(shù)。第二,引物的優(yōu)勢(shì)。只有所有引物同時(shí)識(shí)別靶序列才啟動(dòng)擴(kuò)增,靶序列上的任何區(qū)域與引物不匹配均不能完成擴(kuò)增,從而保證其特異性和靈敏度。第三,結(jié)果判定的優(yōu)勢(shì)。本研究選用染料鈣黃綠素進(jìn)行顯色,這種染料不抑制擴(kuò)增反應(yīng),所以可以在擴(kuò)增前加入反應(yīng)管,擴(kuò)增后用裸眼觀(guān)察反應(yīng)管的顏色變化即可,不但避免了反應(yīng)后開(kāi)蓋帶來(lái)的氣溶膠污染問(wèn)題,而且具有和電泳檢測(cè)相當(dāng)?shù)男Ч?,直觀(guān)性好。

本研究建立的RT-LAMP技術(shù)為HCV的分型檢測(cè)提供了初步探索經(jīng)驗(yàn)。如果對(duì)該技術(shù)做進(jìn)一步的完善,如檢測(cè)不常見(jiàn)的HCV基因型或研制一體化、自動(dòng)化的檢測(cè)裝置,將更有利于該技術(shù)在現(xiàn)場(chǎng)或基層醫(yī)院的推廣,有利于丙肝患者個(gè)體化治療的發(fā)展。

參考文獻(xiàn):

[1] Peng J, Lu Y, Liu W, et al. Genotype distribution and molecular epidemiology of hepatitis C virus in Hubei, Central China[J]. PLoS One, 2015, 10(9): e0137059. DOI: 10.1371/journal.pone.0137059

[2] Zhang LX, Wang L, Xu WS, et al.Study of the distribution of HCV genotypes and serotypes in Shandong province[J]. J Clin Hepatol, 2005, 21(4): 215-216. (in Chinese)

張立新, 王磊, 徐皖蘇, 等.山東地區(qū)丙型肝炎病毒的基因型及血清學(xué)分型的研究[J]. 臨床肝膽病雜志, 2005,21(4):215-216.

[3] Bruno S, Crosignani A, Maisonneuve P, et al. Hepatitis C virus genotype 1b as a major risk factor associated with hepatocellular carcinoma in patients with cirrhosis: a seventeen-year prospective cohort study[J]. Hepatol (Baltimore, Md), 2007, 46(5): 1350-1356. DOI: 10.1002/hep.21826

[4] Raimondi S, Bruno S, Mondelli MU, et al. Hepatitis C virus genotype 1b as a risk factor for hepatocellular carcinoma development: a meta-analysis[J]. J Hepatol, 2009, 50(6): 1142-1154. DOI: 10.1016/j.jhep.2009.01.019

[5] Sangiovanni A, Iavarone M. Hepatitis C virus genotype 1b, cirrhosis, and risk of hepatocellular carcinoma[J]. Hepatol (Baltimore, Md), 2008, 47(1): 357; author reply -8. DOI: 10.1002/hep.22060

[6] Nagano T, Seki N, Tomita Y, et al. Impact of chronic hepatitis C virus genotype 1b infection on triglyceride concentration in serum lipoprotein fractions[J]. Intl J Mol Sci, 2015, 16(9): 20576-20594. DOI: 10.3390/ijms160920576

[7] Xie ZB, Zhou JL, Li YZ, et al. The characteristics and clinical significance of HCV genotypes in huaihua area of Hunan province[J]. China J Mond Med, 2013, 23(31): 43-46. (in Chinese)

謝知兵, 周建亮, 李勇忠, 等. 懷化地區(qū)丙肝基因分型分布及臨床意義[J]. 中國(guó)現(xiàn)代醫(yī)學(xué)雜志, 2013,23(31):43-46.

[8] Kargar M, Askari A, Doosti A, et al. Loop-mediated isothermal amplification assay for rapid detection of hepatitis C virus[J]. Indian J Virol, 2012, 23(1): 18-23. DOI: 10.1007/s13337-012-0067-2

[9] Wang QQ, Zhang J, Hu JS, et al. Rapid detection of hepatitis C virus RNA by a reverse transcription loop-mediated isothermal amplification assay[J]. FEMS Immunol Medical Microbiol, 2011, 63(1): 144-147. DOI: 10.1111/j.1574-695X.2011.00828.x

[10] Yang J, Fang MX, Li J, et al. Detection of hepatitis C virus by an improved loop-mediated isothermal amplification assay[J]. Arch Virol, 2011, 156(8): 1387-1396. DOI: 10.1007/s00705-011-1001-4

[11] Margall N, March F, Espanol M, et al. Two unusual hepatitis C virus subtypes, 2j and 2q, in Spain: Identification by nested-PCR and sequencing of a NS5B region[J]. J Virologi Methods, 2015, 223: 105-108. DOI: 10.1016/j.jviromet.2015.07.022

DOI:10.3969/j.issn.1002-2694.2016.04.013

通訊作者:劉金霞,Email:1158210524@qq.com

中圖分類(lèi)號(hào):R373

文獻(xiàn)標(biāo)識(shí)碼:A

文章編號(hào):1002-2694(2016)04-0383-05

Corresponding author:Liu Jin-xia, Email: 1158210524@qq.com

收稿日期:2015-10-26修回日期:2015-12-20

Visual genotyping detection of HCV by reverse transcription loop-mediated isothermal amplification technique

ZHAO Na1,2, LIU Jin-xia1, SUN Dian-xing2

(1.ChengdeMedicalUniversity,Chengde067000,China;2.BethuneInternationalPeaceHospital,Shijiazhuang050082,China)

Abstract:Reverse transcription loop-mediated isothermal amplification (RT-LAMP) method was applied to detect hepatitis C virus(HCV) genotypes 1b and 2a visually, and provided prelimary exploration experience for its promotion at field or in primary care hospitals. First, clinical samples were collected and genotyped by fluorescent quantitative PCR, which could genotype these samples into HCV 1 genotype and non-1 genotype in general. After that, RT-LAMP primers were designed according to HCV genotypes 1b and 2a, the reaction condition was tested for optimization. The specificity of the 2 sets of primers was validated by interchange of templates. The sensitivity of the 2 sets of primers was validated through detection of dilute templates. In the meantime, products strain was realized by calcein for visual HCV genotyping detection. At last, clinical samples were detected by RT-LAMP, and positive rate of RT-LAMP was calculated, the chi-square test was applied to compare the RT-LAMP with fluorescent quantitative PCR. Results showed that optimized RT-LAMP had good specificity,which the sensitivity for detection of HCV genotype 1b was 103 IU/mL and for HCV genotype 2a was 104 IU/mL, respectively. In addition, calcein showed the same effect with electrophoresis in products detection. After detection of clinical samples, RT-LAMP had no statistics difference with fluorescent quantitative PCR (P>0.05)for detection of HCV genotype 1b. RT-LAMP had statistics difference with fluorescent quantitative PCR (P<0.05) for detection of HCV genotype 2a, but we found that there were two HCV 2b samples in the undetected samples. In conclusion, the RT-LAMP method performs well for visualized genotyping detection of HCV. It is easy to operate, with good specificity and sensitivity, and has the application prospect at field or in primary care hospitals.

Keywords:hepatitis C virus (HCV); reverse transcription loop-mediated isothermal amplification (RT-LAMP); genotyping detection

全軍醫(yī)藥衛(wèi)生科研基金項(xiàng)目(No.CBJ14C010)資助

当雄县| 宜阳县| 水富县| 湛江市| 通榆县| 玛多县| 青岛市| 卢龙县| 封丘县| 西城区| 金乡县| 伊吾县| 宣城市| 湘乡市| 贵港市| 金川县| 仙桃市| 安化县| 会同县| 海盐县| 洪洞县| 广灵县| 洛浦县| 万盛区| 沅江市| 缙云县| 岳普湖县| 宁强县| 夏津县| 屏东市| 阆中市| 宿迁市| 双柏县| 凭祥市| 南汇区| 普宁市| 河东区| 新巴尔虎左旗| 郓城县| 东丰县| 库伦旗|